2008

Aug

Starfish, Rake, and Sun Grid Engine

It’s dirty, but it’s a first attempt at starting parallel jobs using a rake task.
Aug 12th

Jul

Install a Ruby Gem without sudo access

gem install gem_name --install-dir=~/.gems/
Jul 24th
Makers of GitHub, release a paste bin with...
Jul 22nd

Jun

Great LaTeX thesis template
Jun 19th
Strategy for using git in a workflow
Jun 18th
Times Higher Education - Curse.com or...
Jun 16th
The evolution of a Ruby programmer
Jun 16th

Example bioinformatics data validations

validates_true_for :alignment, :logic => lambda {   re = Regexp.new(/\d+\s\d+/) !...
Jun 3rd

Example bioinformatics log file

W, [2008-06-03T11:29:39.719022 #29112]  WARN — : Load gene: Q0075 is not a valid coding...
Jun 3rd

May

Go West, Young Man: Does Open Access Really...
May 29th
Using lighthouse to manage a research...
May 29th

Simple Ruby markdown script using...

#!/usr/local/bin/rubyrequire 'rubygems'require 'bluecloth'require 'rubypants'puts...
May 19th

Yeast gene reqular expression

Y[A-Z]{2}\d{3}[CW](-[AB])? Revisions welcome
May 8th

Git pull messages show you your hard...

Updating 60661c5..f7326c6Fast forward .gitignore            |    2 ++ Rakefile              |   22...
May 4th